PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498438.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 299aa    MW: 33114.6 Da    PI: 5.0557
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-1383132254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i e +v+YI++L
  XP_004498438.1  83 SMSHIAVERNRRKQMNEQLSILRSLMPCF---YVKRGDQASIIEGVVDYINEL 132
                     689*************************9...9*****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3781132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.85E-1381137No hitNo description
Gene3DG3DSA:4.10.280.102.9E-1282136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1682149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-1183132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1087138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
METQKVPIDD ESLLLSDIFS NAEFGGGEDL FSILENVVPP NSTTSSLSDP PQDYETETSF  60
KCKRQKIALT SIEEQNNDGQ HRSMSHIAVE RNRRKQMNEQ LSILRSLMPC FYVKRGDQAS  120
IIEGVVDYIN ELHQLLQCLE TKKQRKVYNE VLSPRLLIQS PRISPLSPRK IIPISSPKTP  180
QPWLQPCGGG GGYLSSPTSS ANSSINDNIN ELVANSKSSI ADVEVKFSGP HVLLKTISSR  240
IPGQAMRIIS ALEDLALEIV HLSVSTADET MLNSFTIKIG IECQLSAEEL AQQIQQTFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498438.10.0PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ700C77e-87SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A072VF691e-139A0A072VF69_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGGLYMA04G41710.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.14e-54bHLH family protein